Web13 apr. 2024 · The strength of association between species assemblages and stand groups may indicate degrees of preferences for specific site groups. We used the function “multipatt” of the package indicspecies (De Caceres & Jansen, 2016). We computed 95% confidence intervals using 999 permutations with the argument func as r.g. 2.3.3 Data … WebWe focused on those microbial phylotypes (ASVs) that (i) were relatively ubiquitous (>25% of all cities), (ii) were classified as “species indicators” of greenspaces using the algorithm of the “indicspecies” R package (see Materials and Methods), and (iii) showed statistically significantly higher proportions in urban rather than natural environments (see Materials …
The microbiomes of two Singaporean corals show site-specific
Web21 jun. 2024 · The bacterial 16S rRNA genes of 381 samples including seawater, sediment, sponge tissue ( Coscinoderma matthewsi and Amphimedon queenslandica ), coral tissue and mucus ( Acropora tenuis and Acropora millepora) and macroalgal surfaces ( Sargassum sp.) were sequenced (Fig. 1 ). Web7 jan. 2012 · Details Input data for this function is the species matrix X and either a matrix of group memberships (U) or a vector of numeric group labels (cluster). This R function works for both presence/absence and quantitative species data, depending on … raisin violet
R: Predicts site group from indicators
Web8 okt. 2024 · Tour Start here for a quick overview of the site Help Center Detailed answers to any questions you might have Meta Discuss the workings and policies of this site Webindicators<-function (X,cluster,group,func="IndVal",min.order=1,max.order=5,max.indicators=NULL,At=0,Bt=0,sqrtIVt=0,control=how(),permutations=NULL,print.perm=FALSE,nboot.ci=NULL,alpha.ci=0.05,XC=TRUE,enableFixed=FALSE,verbose=FALSE){# … cyanoguanidine eu rar